In the season finale, J.D. and Elliot start thinking about their future and if they both made a mistake in not being with each other.

Kim moves in with J.D.in order to raise their child together.

J.D. and Turk go to a medical convention in Phoenix, Arizona, where they run into J.D.'s ex-girlfriend Dr. Kim Briggs, who has a surprise for J.D.

J.D. tries to get together with Elliot's sorority sister Melody, but she just wants to make out with him without going further.

When Keith leaves town for a few days, J.D. expects that he'll finally be able to spend some quality time with Elliot. But he doesn't anticipate Elliot's old college friend dropping by. J.D. switches between hitting on her and competing with her for Elliot's attention.

The perspective shifts between Jordan, Ted, and Todd, as they go about their day.

In the wake of Laverne's funeral, the Sacred Heart Staff decide to implement lessons from her life to their actions. Carla is upset that everyone seems to act as if nothing has changed.

Laverne is brain-dead, and her family decides to take her off life support. One by one, the staff say their goodbyes, except Carla, who stoutly refuses to accept what's happening. She consequently finds herself "haunted" by Laverne.

Laverne and Dr. Cox engage in a philosophical debate. Carla finds a hot nanny for Isabella, and Turk struggles to find a way not to leer at her.

J.D. and Turk try to treat Dr. Kelso's uninsured friend. Meanwhile, Dr. Kelso himself is concerned about a clothing thief.

When Private Dancer is released from the hospital, the military informs him that his injuries are too severe to be reinstated into the service, so he gets depressed.

A memory loss patient is the peg for a look back on the last seasons of Scrubs, when the Sacred Heart crew looks back at their memorable moments.

J.D. develops a crush on a new physical therapist but due to his latest misfortunes, he finds it difficult to ask her out.

A Croatian Doctor comes to Sacred Heart, only to find out that he has to redo his Internship there.

After being convinced to go to Tacoma for Kim's first ultrasound, J.D., along with Carla, Elliot, Janitor, Keith and Ted, takes Kelso's new RV on a road trip.

The hospital is seen through the eyes of Dr. Kelso, who befriends an Iraq War veteran.

A new patient at the hospital wakes up and sees everything happening around her as a musical.

Elliot begins enjoying luxuries since she has extra money with her new private practice gig. But eventually, J.D. becomes jealous of her and that forbids him the use of these privileges.

Dr. Cox feels like the TV character House when he has to solve several mysteries, one of them being Elliot's anger towards Dr. Kelso, while for some reason she is taking it out on Turk.

J.D. and Kim are surprised of how much they have in common.

J.D. and Kim start contemplating about their future and their baby's future.

J.D. addresses the news that he is going to be a father.